Database Link Settings¶
Use the Database Link Settings
dialog (Data->query database->Settings
) to set or update the URLs that Flapjack will use when attempting to query a remote database for line or marker information.
Line searches
- enter a valid URL containing a location that can be queried for information on a line, where $LINE will be replaced by the actual name of the line.Marker searches
- enter a valid URL containing a location that can be queried for information on a marker, where $MARKER will be replaced by the actual name of the line.
Genotype File Headers¶
Flapjack’s genotype file format supports headers for specifying Database Link Settings
.
Line searches
# fjDatabaseLineSearch = http://mydatabase.com/search?line=$LINE
As above, enter a valid URL containing a location that can be queried for information on a line, where $LINE will be replaced by the actual name of the line.
Marker searches
# fjDatabaseMarkerSearch = http://mydatabase.com/search?marker=$MARKER
As above, enter a valid URL containing a location that can be queried for information on a marker, where $MARKER will be replaced by the actual name of the line.